People in the lab

Principal Investigator

Jie Zheng（郑杰）

Associate Professor, SIST, ShanghaiTech University

Ph.D., Computer Science & Engineering, University of California, Riverside, USA
B.Eng., Computer Science & Engineering, Zhejiang University, China

Biography:
http://sist.shanghaitech.edu.cn/2018/1018/c2739a34557/page.htm
http://sist.shanghaitech.edu.cn/sist_en/2018/0820/c3846a31779/page.htm

Curriculum Vitae

Graduate Students

Ke Wang （王柯）

Xin Wang（王莘）

Undergraduate Students

Jie Meng （蒙杰）

Visiting Students

Xinnan Dai （戴昕男）

Alumni (partial list):

Postdoc Fellows (at Nanyang Technological University, Singapore):

Dr. Piyushkumar MUNDRA (Jan. 2013 - Jun. 2013): currently Computational Biolost at Cancer Research UK, Manchester Institute, UK

Dr. WU Min (Jul. 2012 - May 2013): currently Research Scientist at Institute for Infocomm Research (I2R), A*STAR, Singapore

Dr. ZHAO Lina (Research Associate, Sept. 2013 - Mar. 2014; Postdoc, Mar. 2014 - May 2014): currently Resarch Fellow at University of Southern California, USA

Dr. LIU Hui (visiting scholar, Oct. 2014 - Nov. 2015): currently Associate Professor, Changzhou University, China

Dr. ZHANG Xiaomeng (May 2014 - Jan. 2017): currently Research Fellow, SIgN, A*STAR, Singapore

Dr. MA Lichun (Oct. 2016 - Oct. 2017): currently Research Fellow at National Cancer Institute, NIH, USA

Dr. CHONG Ket Hing (May 2015 - May 2018, PhD, Lincoln University, New Zealand): currently Research Fellow at Toronto University, Canada

Former PhD students (at NTU):

Mr. Fransiskus Xaverius Ivan (PhD student, graduated May 2014, jointly with Prof Jagath C. Rajapakse of SCSE, NTU,
Prof Vincent Chow of NUS and Prof Roy Welsch of MIT, in Singapore-MIT Alliance Program)
PhD thesis: Systems-level host response to low and high virulent influenza A (H3N2) virus infections
Current position: Lecturer, Surya University, Indonesia

Ms. CHEN Haifen (PhD student, Aug. 2011 - Aug. 2015)
PhD thesis: Systems modeling and network inference for genetic and epigenetic regulation of gene expression
Current position: Postdoc Fellow, McGill University, Canada

Mr. ZHANG Fan (PhD student, Jan. 2012 - Jan. 2016)
PhD thesis: Computational prediction of cell fates by systems modeling of cellular signaling pathways
Current position: Postdoc Fellow, Genome Institute of Singpore, A*STAR, Singapore

Mr. Shital Kumar MISHRA (Aug. 2012 - Aug. 2016)
PhD project: Machine learning methods for predicting cancer drug effects from signaling and cell fate data
Current position: Postdoc Fellow, Soochow University, China

Ms. GUO Jing (Aug. 2013 - Dec. 2017, SCSE, NTU; jointly with Dr. Vivek Tanavde, BII, A*STAR, Singapore)
PhD project: Mathematical modeling and simulation of stem cell differentiation and reprogramming by Waddington’s epigenetic landscape
Current position: Data Scientist, Shopee Singapore

Mr. Paolo Alberto LORENZINI (Jan. 2014 - May 2018, jointly with Prof Xavier Roca, SBS, NTU)
PhD project: Global analysis of alternative splicing upon differentiation of human monocytes

Ms. Pritha DUTTA (Aug. 2017 - present, NTU)
PhD project: Computational modeling of cell death dysregulation in ageing related diseases

Ms. ZHOU Xinrui (Aug. 2015 - present, jointly with Prof Kwoh Chee Keong, SCSE, NTU)
PhD project: Computational virulence model with functional information for influenza viruses

Master of Science (MSc) students (at NTU):

Ms. Vijayaraghavan Aadhitthya (MSc student, Aug. 2011 - July 2012)
Thesis: Detecting codon usage bias selected against protein misfolding

Mr. CHEN Hao (MSc student, Aug. 2012 - Aug. 2013; project officer Aug. 2013 - July 2014)
Thesis: Genome-wide discovery of DNA sequence motifs stimulating meiotic recombination hotspots

Mr. D.A. Kasun MADURANGA (MSc student, Jan. 2012 - Feb. 2013; project officer and research associate, Jan. 2012 - Jun. 2014)
Thesis: Performance comparison of dynamic Bayesian networks and Random forests ensemble on gene network inference

Project Officers / Research Associates (at NTU):

Ms. Aarthi MOHAN (jointly with Prof Mark Featherstone, SBS, NTU, Jan. 2014 - Dec. 2016)

Ms. LI Xue-Juan (Sept. 2012 - Jul. 2014)

Mr. LIU Xingliang (Aug. 2013 - Jun. 2014): currently Bioinformatics Specialist at Genome Institute of Singapore (GIS), A*STAR, Singapore

Ms. Chinh SU-TRAN (Jan. 2014 - Jun. 2014): currently Postdoc Fellow at Bioinformatics Institute (BII), A*STAR, Singapore

Mr. Alborzi Seyed Ziaeddin (Sept. 2013 - Jun. 2014): currently PhD Student at INRIA Nancy, France

Mr. WONG Mingjie (Sept. 2016 - Feb. 2017): currently Statistician at Department of Statistics, Ministry of Trade and Industry, Singapore